Whole Grain Molasses Cookies
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These wholesome molasses cookies are made with 100% whole grains, olive or avocado oil, and without refined sugar. Quick and simple to make, chewy and delicious, this Whole Grain Molasses Cookies recipe is a keeper!

Molasses cookies have long been a favorite of mine. I have many memories of my mom making them and good times spent dipping freshly baked and still warm molasses cookies into a glass of whole milk. Pulling them back out of the milk the texture would be chewy-squishy and the flavor, as always, heavenly.
These have likewise become a favorite of my own children. I’m always experimenting with ways to create sweet treats and savory snacks for my kids that are more wholesome. So I’ve “healthified” this classic cookie and I’ll tell you what, any time I make these for my kids’ friends when they come over, they’ve never once questioned them – they simply gobble them up and ask for more.
Once you’ve tried these I’m sure you’ll agree that you’re not missing a thing by passing up the white flour and sugar. These Healthier Whole Grain Molasses Cookies have a fabulously chewy texture and phenomenal flavor!

I’m using a grain called Einkorn for these. What we know as wheat today has undergone a series of genetic changes over the years, all for the purpose of increasing both yield and gluten content (no surprise to the increase in gluten sensitivities). When you look at wheat’s DNA structure, it’s almost unidentifiable to its original ancestor – they’re almost completely different grains. You can even see the difference visually: Wheat, left (nearly double in length and paler in color) and Einkorn, right (smaller and darker in color).

What is Einkorn?
Einkorn is the most ancient form of wheat on earth and hasn’t undergone any of these genetic changes. It is the purest form of wheat we have. It contains a different composition of gluten that our bodies are more easily able to digest, even more so than spelt (which is also an older form of wheat, but unlike einkorn has been altered numerous times over the years). In fact, many people with gluten sensitivities have found that they’re able to tolerate einkorn.
Additionally, most people who have tried einkorn agree that it tastes much better than wheat. Some well-stocked grocery stores carry it and you can also purchase einkorn online.
NOTE: You can use whichever whole grain you like for these cookies, but Einkorn is a great option, as is spelt.
Whole Grain Molasses Cookies Recipe
Let’s get started!
In a large bowl, add the oil, coconut sugar, egg and molasses and beat until combined.
In another bowl, add the flour, baking soda, salt, cinnamon, ginger, cloves and nutmeg and stir to combine. For some added flavor and texture you can also add some finely chopped Candied Ginger.

Add the dry ingredients to the wet ingredients and beat until combined into a stiff dough.

Roll the batter into 1-inch balls and then roll the balls in cane sugar (this is optional). Place the balls on a lined cookie sheet spaced two inches apart.
Bake in the oven preheated to 350 degrees F and bake for 8-10 minutes until the cookies are crackly on top and a little darker around the edges.

Remove from the oven and let the cookies sit for a couple of minutes on the baking tray.
Transfer the cookies to a wire rack to let cool.

Once fully cooled, store your whole grain molasses cookies in an airtight container. At room temperature they will keep for up to a week. They can also be frozen for up to 2 months.
Enjoy!

For more wholesome and delicious desserts be sure to try my:
- Chocolate Deception Cake
- Whole Grain Chocolate Cupcakes
- Three Ingredient Peanut Butter Cookies
- Whole Grain Zucchini Muffins
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Whole Grain Molasses Cookies
Ingredients
- 2/3 cup olive or avocado oil (don’t worry, you won’t be able to taste the olive oil)
- 1 cup coconut sugar or equivalent dry sweetener of choice (my kids enjoy these even with half the amount of sugar)
- 1/4 cup molasses
- 1 large egg
- 2 cups einkorn flour, spelt flour or whole wheat flour
- 2 teaspoons baking soda
- 2 teaspoons ground cinnamon
- 1 teaspoon ground ginger
- 1/2 teaspoon ground cloves
- 1/2 teaspoon ground nutmeg
- 1/2 teaspoon sea salt
- organic cane sugar for rolling
Instructions
- Preheat the oven to 350 degrees F.In a large bowl, add the oil, coconut sugar, egg and molasses and beat until combined.In another bowl, add the flour, baking soda, salt, cinnamon, ginger, cloves and nutmeg and stir to combine. Add the dry ingredients to the wet ingredients and beat until combined into a stiff dough.
- Roll the batter into 1-inch balls and then roll the balls in cane sugar. Place the balls on a lined cookie sheet spaced two inches apart.Bake the cookies for 8-10 minutes until the cookies are crackly on top and a little darker around the edges. Remove from the oven and let sit for a couple of minutes before transferring them to a wire rack to cool.Store in an airtight container where they will keep for up to a week at room temperature.
Nutrition
Originally published on The Daring Gourmet January 28, 2018
These are very tasty. I doubled the batch with plans to freeze half. I used half of regular cane sugar and they were plenty sweet, especially after rolling them in sugar. I used 2 parts olive oil and 1 part coconut oil and although I could taste the olive oil, it was pretty subtle. They spread a good amount so keep that in mind. I will definitely make these again.
Thank you so much for the feedback, Kelly, I’m happy you enjoyed them!
Hello! Has anyone tried substituting 1/4c applesauce for the egg to make them vegan?
Thanks!
Hello. I tried the substitution of 1/4 c applesauce for the egg. It wasn’t bad, a good option for anyone wanting a vegan option. Looking forward to making them with an egg soon.
My favorite cookies to make! They get rave reviews every time, including from my two young kids. I generally use whole wheat flour, and have used different sugars in varying amounts and the cookies still somehow remain very consistent. I use organic blackstrap molasses, which is a strong flavor, but we love it!
I’m so glad you and your family enjoy these, Reilly, thank you very much for the feedback!
I made this recipe for a friend’s birthday and she was encouraging me to sell them at my start up cottage bakery because they were that good. I made a second batch and doubled it and I’m freezing the dough that way I can have molasses cookies on demand. Fabulous recipe! looking forward to exploring more of your website since I’m a newbie here.
Oh I’m so happy they were such a hit, Ashley, thank you very much! They’re really yummy as ice cream sandwiches too with vanilla ice cream in the middle :) So glad you found my site and I hope you’ll come back often <3
Can you use blackstrap molasses in this recipe or did you use grandma’s molasses? Curious if it would be ok to use blackstrap. Thanks
Hi Diane, I use Grandma’s molasses for baking. Blackstrap “can” be used but I don’t recommend it; it’s very potent and quite bitter and is generally used for making things like barbecue sauce.
These were really good. I used avocado oil and a combo of date powder and maple sugar for the sweetener and they were just right.
Fantastic, thank you so much Jennifer!
These are excellent! Perfectly spiced and sweetened. Great chewy texture! Will be making over and over.
Fantastic! I’m so glad you enjoyed them, Christine, thank you!
Great recipe. I am sensitive to oils and can taste the olive oil, next time I will use either avocado oil or butter. I agree with 1/2 the sugar. I may let the dough rest for 15 min to absorb the liquid. I need to do that when making bread with fresh milled flour. Thank you for the recipe!
Hi Kathy, I’m happy you enjoyed it and absolutely, feel free to use another oil of your choice. Thank you for the feedback!