BEST Gluten Free Zucchini Muffins
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This gluten free zucchini muffins recipe yields such wonderfully moist, fluffy and flavorful muffins, no one will ever guess that they’re gluten free! And the best part is that they’re made without all those typical starches – this whole grain zucchini muffins recipe is made with oats and buckwheat!

I’m not a fan of many, probably even most, gluten free recipes because in addition to their texture being dry and sandy their flavor of many of the gluten free flours just isn’t good. These gluten free zucchini muffins rectify both of those issues and the result is a wonderfully moist texture with a flavor that’s so delicious no one will guess they’re GF.
Are These Muffins “Sandy” and Do They Have That “Gluten Free” Flavor?
No and No. And the reason is because we’re not using a pre-made gluten free flour blend nor are we using a long list of special gluten free flours (e.g., brown rice flour, white rice flour, potato starch, tapioca starch, etc). These whole grain zucchini muffins feature two kinds of flour: Buckwheat flour creates a nice and smooth texture and oat flour contributes a fabulous flavor. You’re not going to get the typical response of “these are okay considering they’re gluten free.” More than likely you’ll get a “these are really good! Seriously, they’re gluten free??”
And of course the addition of the zucchini not only elevates the “healthiness” status of these muffins so you can eat them with slightly less guilt, it also adds moistness to these already fluffy muffins, making these buckwheat zucchini muffins simply irresistible.
Can I Use This Recipe To Make Zucchini BREAD Instead?
You sure can! These gluten free zucchini muffins will double perfectly as gluten free zucchini bread. Simply pour the battered into a greased 8×4 or 9×5 inch loaf pan and increase the baking time by 10-15 minutes or until a toothpick inserted into the center of the loaf comes out clean.
Can I Use Yellow Squash Instead?
Absolutely. You can use zucchini (courgette) and yellow squash interchangeably. Or, for an added splash of color, you can use a combination of both. For an autumn variation you can also use grated fresh pumpkin. The resulting texture will be a little denser but it will also taste great. If using pumpkin feel free to add some additional spices like clove, nutmeg, ginger and allspice.
We have 4 different varieties of summer squash growing like crazy in our garden right now so I’ve been using it every which way possible. Zucchini muffins and zucchini bread are always a perfect way to utilize those bountiful summer squash varieties.
Can I Freeze These Muffins?
Yes, you can! Wrap them well and freeze them for up to 3 months. Take them out, let them thaw and enjoy. You can also heat them briefly in the microwave or oven.
Gluten Free Zucchini Muffins Recipe
Let’s get started!
Finely grate the zucchini. It will be very wet so give it a squeeze to remove the excess water.
Preheat the oven to 350 degrees F. Line a standard 12-cup muffin tin.
In a large mixing bowl beat the sugar, butter, eggs and vanilla extract until combined. In a separate bowl combine the flours with the baking powder, salt, baking soda, cinnamon and nutmeg. Add the dry ingredients to the wet ingredients and beat until combined. Stir in the zucchini.
Pour the batter into the muffin tins to a little less than 3/4 from the top.
Bake for 20-25 minutes or until a toothpick inserted into the center comes out clean.
For an added level of deliciousness you can spread these muffins with cream cheese or cream cheese frosting.
Enjoy!
For more gluten free goodies be sure to try my:
- Gluten Free Aebleskiver
- Gluten Free Treacle Tart
- Gluten Free Oat Waffles
- Gluten Free Crepes
- Gluten Free Baked Donuts
- Gluten Free Carrot Cake
- Gluten Free Chocolate Chip Cookies
- Gluten Free Double Chocolate Chunk Cookies
- Gluten Free Pumpkin Waffles
Save This Recipe
BEST Gluten Free Zucchini Muffins
Ingredients
- 2/3 cups buckwheat flour
- 1/2 cup oat flour
- 1 teaspoon baking powder
- 3/4 teaspoon salt
- 1/4 teaspoon baking soda
- 3/4 teaspoon ground cinnamon
- 1/8 teaspoon ground nutmeg
- 3/4 cup dark brown sugar
- 1/3 cup butter (or coconut oil) , melted and cooled
- 2 large eggs
- 1 teaspoon quality pure vanilla extract
- 1 1/4 cup finely shredded zucchini (courgette) or yellow squash
Instructions
- Preheat the oven to 350 degrees F. Line a standard 12-cup muffin tin.
- Finely grate the zucchini. It will be very wet so give it a squeeze to remove the excess water. In a large mixing bowl beat the sugar, butter, eggs and vanilla extract until combined. In a separate bowl combine the flours with the baking powder, salt, baking soda, cinnamon and nutmeg. Add the dry ingredients to the wet ingredients and beat until combined. Stir in the zucchini.Pour the batter into the muffin tins to a little less than 3/4 from the top. Bake for 20-25 minutes or until a toothpick inserted into the center comes out clean. Transfer the muffins to a wire rack to cool.
- NOTE: This can also be made into zucchini bread. Grease a 8×4 or 9×4 inch loaf pan and increase baking time to 35-40 minutes depending on loaf pan size or until a toothpick inserted into the middle comes out clean.
Notes
Nutrition
Originally published on The Daring Gourmet August 20, 2019
The best zucchini bread I have ever made! I replaced applesauce for eggs but that’s the only change I made. Delicious!
Fantastic, Melissa, I’m thrilled you enjoyed them, thank you!
Absolutely delicious! Great flavour and consistency. I added some ground flax seed and chia seed to increase the fibre even more and added a bit of water to compensate. These will be my go to muffins.
Fantastic, Li, thanks so much for the feedback and I’m thrilled that you enjoyed them!
These are delicious, however next time I make them (and there will be a next time!), I’ll add a little more sweetener….or chocolate chips…depending on the day! My four year old thought they were ‘OK’ until he was more hungry at which point he gobbled them. These are much ‘lighter’ tasting than my usual (gluten full, sigh) recipe. It doesn’t have any of that gluten-free taste so two thumbs up for a delicious light muffin. If you’re topping with cream cheese, jam etc. then it’s perfect as is.
Thanks so much for the feedback, Sherry, I’m glad you enjoyed them!
Could you use a different sweetener such as maple syrup?
Hi Jennifer, this recipe uses a granulated form of sugar so using a liquid sweetener will throw off the other ingredient ratios. If you prefer to avoid regular brown sugar you can use another dry sweetener in its place like Sukrin Gold.
I cannot eat eggs, can I substitute with flax eggs please? :) thanks!
Hi Jana, yes you can.